As he falls to the ground, he flashes back to uploading the Intersect while Bryce died and we hear Casey tell him to tell his sister he's going on a last-minute trip to Europe for six weeks. Chuck asks where they're really going, and then we see Chuck and Casey having the conversation "Six Months Earlier" (so ... right after the finale, for the easily confused). Casey says they're going to a training facility for Chuck to learn how to use the new Intersect, to become a superspy. Chuck asks Sarah if she's heard he's going to be trained to be a real spy. She heard, but doesn't look happy about it. He asks what's the matter, and she says if he does this, he's going to be a spy for the rest of his life and everything will be a new mission and a new identity, and he won't be the same person. He says that's a great thing, but she says they could run away together and never look back. She has some money saved up, and would have to get them new identities. She tells him to go to the training facility in Prague, but to meet her at the Nedrazi train station in three weeks and she'll figure it all out. He asks what she's saying, and she says she wants to be a real person again. With him. She says this is what he wants, right, and then asks if he'll run away with her. He says yeah, and they both smile.
Back in the present, Ellie and Awesome are asking Chuck what happened, where Sarah is. He just sits there zoning out, but finally says he lost her, the girl of his dreams, and it was all his fault. Ellie suggest picking up the phone and calling her, since she's sure she misses him too. Cut to Sarah swimming in a cute white bikini. When she gets out of the water, her phone rings, and an accented guy sitting next to the pool hands her the phone, calling her "my dear." As if a spy would just leave her phone lying out next to her new mission/boyfriend. She looks at the phone, with Chuck's picture on it and throws it into the pool. On the other end, Chuck says, "Pick up Sarah." But then the phone goes dark in the pool. Opening credits. No Anna, but it looks like the rest of the cast is back: Chuck, Sarah, Morgan, Awesome, Big Mike, Jeffster!, with Ellie and Casey.