Somewhere else, Agent Superman and some agents are leading Casey and Sarah. Casey tells him he's not going to get away with this, but Agent Superman says he will, because love-struck Bartowski will try to save them, and this time Agent Superman'll be ready for him. And his father. "Mu-ha-ha." But he actually says it all calm and sedate. He knows he's supposed to be the mustache-twirling villain, but he's a little too snarky for that. Chuck and Bakula find a control panel that Chuck flashes on. They discover it's a fake wall. Bakula gives him an "Aces, Charles," and they open the sucker up. It's like a giant elevator they shut themselves in. Justin tells Agent Superman that Bartowski's infiltrated the base, and Agent Superman's like, "Of course." He insults Chuck for always thinking with his heart, but Justin corrects him, because Chuck and his father didn't infiltrate this base, but the Ring base. They triggered the silent alarm. Agent Superman looks at Justin's Ring phone, which says, "Perimeter breach." They leave Casey and Sarah locked up, and Casey says, "I don't know when it happened, but our boy became a man. Bartowski's a spy. You picked a good one, Walker. Finally." Sarah smiles silently, proudly, and, of course, a little sadly.
Chuck and Bakula end up in a secret lab. Chuck says it's what his dreams have been about, with Dr. Kowambe's research and Agent Superman. They find the Intersect completion screen that says it was uploaded into Daniel Shaw. Chuck says he was right. Ellie is still sitting on the bench when Justin and Agent Superman pull up and run inside the same door that her family just went into. She watches them and starts walking slowly toward the door. Downstairs, Chuck and Bakula are coming back out of the elevator, Chuck saying his team will be vindicated and Agent Superman will be exposed. But, of course, Agent Superman and Justin are standing right there. Agent Superman's like, "Exposed as what? The Intersect?" Then he asks Chuck if he can try on his fancy new watch. Chuck asks him to come and take it from him, but Agent Superman says he'll go ahead and have his friend grab it. Justin, gun trained on Chuck, takes it. Chuck says he doesn't need a watch to beat him, and doesn't Agent Superman want to know how his Intersect stacks up against his own? Agent Superman agrees they're totally equal now, except for that small matter of Chuck letting his emotions get in the way of the Intersect. Chuck says he's never been more calm. Agent Superman: "Really? How do you feel now?" He pulls out a gun and shoots Bakula through the chest. He falls and it goes slow-mo as Chuck yells "No!" and runs to his dad. He begs him to stay with him and be okay. Bakula tells him he's special, and to always remember that. Agent Superman calmly, robotically holsters his gun as Bakula dies.